PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G050400.1
Common NameB456_007G050400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 84aa    MW: 9371.31 Da    PI: 9.0188
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G050400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.58.2e-101558344
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                        +WT+   + + +a +++  +   +W+ +a+ +g g++++++k+++
  Gorai.007G050400.1 15 SWTPKQNKTFEKALAKYDQDtpdRWHNVAKAVG-GKSAEEVKLHY 58
                        7******************9*************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.667862IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.1E-51063IPR009057Homeodomain-like
SMARTSM007178.6E-91264IPR001005SANT/Myb domain
SuperFamilySSF466891.27E-121469IPR009057Homeodomain-like
CDDcd001675.17E-81558No hitNo description
PfamPF002494.0E-81558IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MSSNFLNNSR CSSSSWTPKQ NKTFEKALAK YDQDTPDRWH NVAKAVGGKS AEEVKLHYDA  60
LVRDLKDIES GRYPYPYPSG SNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-26676171RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012457904.14e-44PREDICTED: protein RADIALIS-like 3
SwissprotQ6NNN03e-33RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A0D2QLS95e-57A0A0D2QLS9_G
STRINGPOPTR_0005s12390.11e-37(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.25e-34RAD-like 6
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]